Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

Carlos I. Arbizu; Carla L. Saldaña; Rubén D. Ferro-Mauricio; Julio C. Chávez-Galarza; Jordan Herrera; Sergio Contreras-Liza; Juan C. Guerrero-Abad; Jorge L. Maicelo

doi:10.1080/23802359.2021.2014366

Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

Carlos I. Arbizu, Carla L. Saldaña, Rubén D. Ferro-Mauricio, Julio C. Chávez-Galarza, Jordan Herrera, Sergio Contreras-Liza, Juan C. Guerrero-Abad, Jorge L. Maicelo

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In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.

Idioma original	Inglés
Páginas (desde-hasta)	156-158
Número de páginas	3
Publicación	Mitochondrial DNA Part B: Resources
Volumen	7
N.º	1
DOI	https://doi.org/10.1080/23802359.2021.2014366
Estado	Publicada - 2022

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Arbizu, C. I., Saldaña, C. L., Ferro-Mauricio, R. D., Chávez-Galarza, J. C., Herrera, J., Contreras-Liza, S., Guerrero-Abad, J. C., & Maicelo, J. L. (2022). Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper. Mitochondrial DNA Part B: Resources, 7(1), 156-158. https://doi.org/10.1080/23802359.2021.2014366

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title = "Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper",

abstract = "In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.",

keywords = "arnaucho, chloroplast, genetic resources, NGS, phylogenomics",

author = "Arbizu, {Carlos I.} and Salda{\~n}a, {Carla L.} and Ferro-Mauricio, {Rub{\'e}n D.} and Ch{\'a}vez-Galarza, {Julio C.} and Jordan Herrera and Sergio Contreras-Liza and Guerrero-Abad, {Juan C.} and Maicelo, {Jorge L.}",

note = "Publisher Copyright: {\textcopyright} 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.",

year = "2022",

doi = "10.1080/23802359.2021.2014366",

language = "Ingl{\'e}s",

volume = "7",

pages = "156--158",

journal = "Mitochondrial DNA Part B: Resources",

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}

Arbizu, CI, Saldaña, CL, Ferro-Mauricio, RD, Chávez-Galarza, JC, Herrera, J, Contreras-Liza, S, Guerrero-Abad, JC & Maicelo, JL 2022, 'Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper', Mitochondrial DNA Part B: Resources, vol. 7, n.º 1, pp. 156-158. https://doi.org/10.1080/23802359.2021.2014366

Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper. / Arbizu, Carlos I.; Saldaña, Carla L.; Ferro-Mauricio, Rubén D. et al.
En: Mitochondrial DNA Part B: Resources, Vol. 7, N.º 1, 2022, p. 156-158.

Producción científica: Contribución a una revista › Artículo › revisión exhaustiva

TY - JOUR

T1 - Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

AU - Arbizu, Carlos I.

AU - Saldaña, Carla L.

AU - Ferro-Mauricio, Rubén D.

AU - Chávez-Galarza, Julio C.

AU - Herrera, Jordan

AU - Contreras-Liza, Sergio

AU - Guerrero-Abad, Juan C.

AU - Maicelo, Jorge L.

PY - 2022

Y1 - 2022

N2 - In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.

AB - In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.

KW - arnaucho

KW - chloroplast

KW - genetic resources

KW - NGS

KW - phylogenomics

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U2 - 10.1080/23802359.2021.2014366

DO - 10.1080/23802359.2021.2014366

M3 - Artículo

AN - SCOPUS:85122404634

SN - 2380-2359

VL - 7

SP - 156

EP - 158

JO - Mitochondrial DNA Part B: Resources

JF - Mitochondrial DNA Part B: Resources

IS - 1

ER -

Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

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